PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11775-augustus-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 316aa    MW: 35610.5 Da    PI: 8.7828
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11775-augustus-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05156175120
                                                   EEETTTTEEESSHHHHHHHH CS
                                       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                                   + C++C+k+F+r  n++ H+
  maker-scaffold11775-augustus-gene-0.2-mRNA-1 156 FACSICSKTFNRYNNMQMHM 175
                                                   78*****************9 PP
2zf-C2H216.23e-05240262123
                                                   EEETTTTEEESSHHHHHHHHHHT CS
                                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                   + C +Cgk+F  k + ++H +++
  maker-scaffold11775-augustus-gene-0.2-mRNA-1 240 FMCRKCGKTFAVKGDWRTHEKNC 262
                                                   89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.34E-6127179No hitNo description
PfamPF139122.2E-4156175IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5156175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741156183IPR007087Zinc finger, C2H2
SMARTSM003550.17156178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SMARTSM00355190203235IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.35E-6226260No hitNo description
Gene3DG3DSA:3.30.160.607.4E-6236260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704240260IPR007087Zinc finger, C2H2
SMARTSM0035535240260IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSLRNHLVGE HSLCFQAPTF IEWLKPSPSA SSLSSSSSSS SSSSSYSSLT APKELVQETL  60
QCLPLLGGFT ETKPLKQQDI RLQKEGYTIK EEEVEKVTVA LHIGLPDTGD SDAEKMIFDS  120
KEQEPVKKSF HGCSFNTQSR FWIPTPAQIL VGPMQFACSI CSKTFNRYNN MQMHMWGHGS  180
EYRKGPDSLK GTQPAAMLRL PCYCCAQGCK NNINHPRAKP LKDFRTLQTH YKRKHGAKPF  240
MCRKCGKTFA VKGDWRTHEK NCGKLWYCTC GSDFKHKRSL KDHIRSFGKG HSPHPSLDGF  300
EDEKECITGS EDEFAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023880419.10.0zinc finger protein WIP3
SwissprotQ9SGD11e-126ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2N9ITY60.0A0A2N9ITY6_FAGSY; Uncharacterized protein
STRINGVIT_06s0080g00270.t011e-180(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-122WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]