PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11791-augustus-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 177aa    MW: 19966.1 Da    PI: 5.3086
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11791-augustus-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.82.5e-4014111198
                                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65 
                                                   +CaaC++lrrkC++dC lapyfpae+++kfa vhk+FGasnv+k+++ ++e++reda++++vyeA
  maker-scaffold11791-augustus-gene-0.2-mRNA-1  14 PCAACRMLRRKCESDCLLAPYFPAEEAEKFAGVHKVFGASNVIKMIQMVDETRREDAVKAIVYEA 78 
                                                   7**************************************************************** PP

                                        DUF260  66 earardPvyGavgvilklqqqleqlkaelallk 98 
                                                    ar+rdPvyG++g i++lq+ +++lk++l+++ 
  maker-scaffold11791-augustus-gene-0.2-mRNA-1  79 TARLRDPVYGSAGAIFHLQKMVQELKVQLESIS 111
                                                   ****************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.09513114IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-4014110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGFQMVAQVR AHQPCAACRM LRRKCESDCL LAPYFPAEEA EKFAGVHKVF GASNVIKMIQ  60
MVDETRREDA VKAIVYEATA RLRDPVYGSA GAIFHLQKMV QELKVQLESI SARVLESQAQ  120
RDELLGLLRN VNHLDRLVHP TNAPVVDEGS FMLDDAVLMA YDPVKFPAEC DWFLLEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-35111158112LOB family transfactor Ramosa2.1
5ly0_B3e-35111158112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4440134e-35AM444013.2 Vitis vinifera contig VV78X034710.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924102.11e-124LOB domain-containing protein 1-like
TrEMBLA0A2N9ILL61e-99A0A2N9ILL6_FAGSY; Uncharacterized protein
STRINGEOX956706e-83(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140681921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-45LOB domain-containing protein 1