PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold12492-snap-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GATA
Protein Properties Length: 247aa    MW: 27630.4 Da    PI: 10.127
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold12492-snap-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.63.9e-19111144134
                                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                               C+ C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  maker-scaffold12492-snap-gene-0.6-mRNA-1 111 CADCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 144
                                               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.3E-19105157IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.099105141IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-12106147No hitNo description
Gene3DG3DSA:3.30.50.103.0E-15109144IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.15E-11110140No hitNo description
PROSITE patternPS003440111136IPR000679Zinc finger, GATA-type
PfamPF003206.7E-17111144IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
QWKINNPICY GSICDHQAFS FSSFQSVEED INKHHKLSIC QSQGGDPSKS TTGPVQWMSS  60
KMRLMQKMMN PNFQDTDKST RTIENFSSHQ QHRNGEINSP NCINNNTTRV CADCNTTTTP  120
LWRSGPRGPK SLCNACGIRQ RKARRAMAEA AAAANGIVVP TNISTTKSYK VHNKEKKSRK  180
SHGAQYKTKC KLMDTSHSKR KLSFKDLALS LRNNSTFGRV FPQDEAEAAL LLMELSCGLV  240
HICLFSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3803185e-35FQ380318.1 Vitis vinifera clone SS0ACG71YI23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023888430.11e-126putative GATA transcription factor 22
TrEMBLA0A2N9F7402e-88A0A2N9F740_FAGSY; Uncharacterized protein
STRINGGLYMA14G10830.26e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.19e-22cytokinin-responsive gata factor 1