PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold12640-snap-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TALE
Protein Properties Length: 1150aa    MW: 127535 Da    PI: 6.1027
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold12640-snap-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.41.2e-084374741954
                                               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                               Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  maker-scaffold12640-snap-gene-0.5-mRNA-1 437 FEHflHPYPKDSEKIILARQTGLTRNQVANWFINARVR 474
                                               664559******************************88 PP
2Homeobox29.41.3e-09107311101954
                                                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                  Homeobox   19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54  
                                                Fe   ++yp+++e+  LA+++gLt++qV++WF N R +
  maker-scaffold12640-snap-gene-0.5-mRNA-1 1073 FEHflHPYPNETEKLMLASQTGLTKNQVSNWFINARVR 1110
                                                554459******************************88 PP
3BELL124.34.9e-40301372172
                                      BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaia 69 
                                               erq+lq+kka Lls+l+eVdkrY+qy++q+q+v+ssF++vag+g+a+pYt+lAl++iSrhFr+L+daia
  maker-scaffold12640-snap-gene-0.5-mRNA-1 301 ERQDLQNKKATLLSMLDEVDKRYRQYYHQMQIVVSSFDMVAGCGTAEPYTALALQTISRHFRSLRDAIA 369
                                               799****************************************************************** PP

                                      BELL  70 eqi 72 
                                               +qi
  maker-scaffold12640-snap-gene-0.5-mRNA-1 370 SQI 372
                                               **8 PP
4BELL100.61.2e-329351006172
                                      BELL    1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkda 67  
                                                e++elq k+akL+ lleeV++ Y++y++q++ v+ssFe ++g g+ak+Yt+l l+a+SrhF +L+da
  maker-scaffold12640-snap-gene-0.5-mRNA-1  935 EKHELQVKIAKLIALLEEVEDTYEKYYHQMEEVVSSFELITGAGAAKSYTALGLQAMSRHFCSLRDA 1001
                                                689**************************************************************** PP

                                      BELL   68 iaeqi 72  
                                                i++qi
  maker-scaffold12640-snap-gene-0.5-mRNA-1 1002 IVSQI 1006
                                                ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.4E-59221370IPR006563POX domain
PfamPF075261.2E-48227369IPR006563POX domain
PROSITE profilePS5007112.147415478IPR001356Homeobox domain
SMARTSM003898.6E-9418482IPR001356Homeobox domain
CDDcd000861.17E-11418479No hitNo description
SuperFamilySSF466891.5E-16419485IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-27421484IPR009057Homeodomain-like
PfamPF059203.3E-16435474IPR008422Homeobox KN domain
SMARTSM005745.5E-338661004IPR006563POX domain
PfamPF075262.4E-378711003IPR006563POX domain
PROSITE profilePS5007112.06610511114IPR001356Homeobox domain
CDDcd000863.61E-1110541115No hitNo description
SMARTSM003892.6E-910541118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-2710591120IPR009057Homeodomain-like
SuperFamilySSF466891.8E-1710601121IPR009057Homeodomain-like
PfamPF059209.1E-1710711110IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1150 aa     Download sequence    Send to blast
MATYFPNVSN QRDCLQTPYL GDQKFTSYSE APFHPNNIMM YMNQASSGSY SDILSGNSLP  60
PNCDESVGGR NEMMFIPPIG NRESMQSIDA RLNAVTGDHL GNSVTGNSQV IPRRQLGVPD  120
GEQNIQSQGL SLSLSTQIPS AVSVASFGSE YSNPGLSSFL GNTPCKGDES NRYKDLRSAE  180
CLLSGFPGGN HNATKPEALC NPHSSMNPKE MLCDQYLYEP SAFATTILNS RYLKASQQLL  240
DEVVNVRKAL KQRGLNKHQI QGIGLDVSKE ADGRSNTQSV QMSSDPGEST TNSSCELSPA  300
ERQDLQNKKA TLLSMLDEVD KRYRQYYHQM QIVVSSFDMV AGCGTAEPYT ALALQTISRH  360
FRSLRDAIAS QIQVVQRSLG EQDTSPNGQG GIPRLRYVDQ QLRQQRALQQ FGVMRHAWRP  420
QRGLPENSVS ILRAWLFEHF LHPYPKDSEK IILARQTGLT RNQVANWFIN ARVRLWKPMV  480
EEMYKEEFAE SEMNSKSSPE SALNVPRDNS LASEDRGEEL QDSVISTTAD SVHLGQAYDS  540
KSVHIPNVEI NGQSARIGFE SSAHRDNVLG SGIMKLQGNQ RPKVDDHNLY SDEIILPQQN  600
GGGSLMAAAA TYDMSELGSF VDGSQVSLAL ELRHCENDGF PMSGGANLRG NDTVTSSSGP  660
ESLDFQCMDL GKQHHRFNNP HMLHDFDSPP HPSNMHLFSI SDSITGQNHF QNQNQHFDAY  720
GSALSGSDTV LHHSLGVLPS IQSLGERMSR SIDLVQASTV AEESQINHTR HFMDLLGAAN  780
ESNHQAQRLS LSLGSHVLVP SGQYRQRSFN SDLISPPSYL MSREEAQEPC NPGVEHVSSD  840
YSYTGSSFAS SSASLNRSYS TAYGTESFAS VIGNSVYLKP AQSLLREIVN VGGREINLSN  900
EKYVAKLCRG GRAGALGLSS ELKAELYSNG LLSAEKHELQ VKIAKLIALL EEVEDTYEKY  960
YHQMEEVVSS FELITGAGAA KSYTALGLQA MSRHFCSLRD AIVSQINIRK RKFLQDLPRI  1020
STGLSQLNLF DSETRQTRMT LQQLSMMQGQ RQAWRPIRGL PETSVAILRS WLFEHFLHPY  1080
PNETEKLMLA SQTGLTKNQV SNWFINARVR LWKPMIEEMY KEEFGESSED LNQLTSNSMT  1140
REGVSDPAED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-164241117158Homeobox protein Meis1
4xrs_B2e-164241117158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023903260.10.0BEL1-like homeodomain protein 7 isoform X1
RefseqXP_023903261.10.0BEL1-like homeodomain protein 7 isoform X1
RefseqXP_023903262.10.0BEL1-like homeodomain protein 7 isoform X1
SwissprotQ9FWS91e-112BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A2N9IHG60.0A0A2N9IHG6_FAGSY; Uncharacterized protein
STRINGVIT_18s0001g13150.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-106BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]