PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold12842-augustus-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 191aa    MW: 22119.9 Da    PI: 6.9481
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold12842-augustus-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171764148
                                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                  +g+WT eEd +l+++++ +G g W+t a+  g++Rt+k+c++rw++yl
  maker-scaffold12842-augustus-gene-0.6-mRNA-1 17 KGPWTMEEDMILINYIANHGEGVWNTLAKSAGLKRTGKSCRLRWLNYL 64
                                                  79********************************************97 PP
2Myb_DNA-binding58.61.4e-1870113146
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                   rg+ T+eE++l+v++++++G++ W++Ia++++ gRt++++k++w++
  maker-scaffold12842-augustus-gene-0.6-mRNA-1  70 RGNITAEEELLIVELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 113
                                                   7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-241067IPR009057Homeodomain-like
PROSITE profilePS5129414.9971264IPR017930Myb domain
SuperFamilySSF466891.35E-3015111IPR009057Homeodomain-like
SMARTSM007171.2E-121666IPR001005SANT/Myb domain
PfamPF002494.6E-161764IPR001005SANT/Myb domain
CDDcd001675.79E-101964No hitNo description
PROSITE profilePS5129425.94465119IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-2568119IPR009057Homeodomain-like
SMARTSM007171.9E-1669117IPR001005SANT/Myb domain
PfamPF002497.7E-1770113IPR001005SANT/Myb domain
CDDcd001676.26E-1374113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDRNKLCNSS QDAEVRKGPW TMEEDMILIN YIANHGEGVW NTLAKSAGLK RTGKSCRLRW  60
LNYLRPDVRR GNITAEEELL IVELHAKWGN RWSKIAKHLP GRTDNEIKNY WRTRIQKHIK  120
QAENLQGQTS EVNDQASSSQ ASGMAEPMDV YSPPLYQRTM EPIQIPLPTP ESNETYWSME  180
DIWSMQLFNG D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261211922128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924515.11e-139myb-related protein 305-like
SwissprotP813912e-93MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A2N9J0K91e-127A0A2N9J0K9_FAGSY; Uncharacterized protein
STRINGGLYMA16G07960.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-85myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]