PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold13586-augustus-gene-0.8-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 171aa MW: 19899.6 Da PI: 9.2522

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold13586-augustus-gene-0.8-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	124.4	9.3e-39	9	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFsk 63 lppG+rF+P+d e++ yLkkk++g++ ++ +i+e++ yk ePwdLp k +++e++ew+fF++ maker-scaffold13586-augustus-gene-0.8-mRNA-1 9 LPPGVRFSPKDPEVIELYLKKKITGNDEDT-WFIPEIEFYKDEPWDLPiKsGIATEDQEWFFFTE 72 79***********************888.78**********96347777999***** PP NAM 64 rdkkya...........tgkrknratksgyWkatgkdkevlskkgelvglkktLvfy...kgrap 114 ++ k++ +++r +r+tk+gyWk+tg+d+e++s +++l+g+kktLvf+ ++ ++ maker-scaffold13586-augustus-gene-0.8-mRNA-1 73 QSLKQQddnpkkrkrdqKQERVSRKTKAGYWKSTGTDREIKS-GESLIGMKKTLVFHigtTKGKE 136 999994444433333223355555**************.999*******76655778 PP NAM 115 kgektdWvmheyrl 128 kg t+Wvmhey+ maker-scaffold13586-augustus-gene-0.8-mRNA-1 137 KGIGTKWVMHEYST 150 999*******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.29E-40	6	155	IPR003441	NAC domain
PROSITE profile	PS51005	39.185	9	171	IPR003441	NAC domain
Pfam	PF02365	7.9E-24	10	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MEKLSLDHLP PGVRFSPKDP EVIELYLKKK ITGNDEDTWF IPEIEFYKDE PWDLPIKSGI 60 ATEDQEWFFF TEQSLKQQDD NPKKRKRDQK QERVSRKTKA GYWKSTGTDR EIKSGESLIG 120 MKKTLVFHIG TTKGKEKGIG TKWVMHEYST TQKDFDGKHP GQIVLPPKSL E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-26	9	148	17	140	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-26	9	148	17	140	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-26	9	148	17	140	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-26	9	148	17	140	NO APICAL MERISTEM PROTEIN
3swm_A	2e-26	4	148	15	143	NAC domain-containing protein 19
3swm_B	2e-26	4	148	15	143	NAC domain-containing protein 19
3swm_C	2e-26	4	148	15	143	NAC domain-containing protein 19
3swm_D	2e-26	4	148	15	143	NAC domain-containing protein 19
3swp_A	2e-26	4	148	15	143	NAC domain-containing protein 19
3swp_B	2e-26	4	148	15	143	NAC domain-containing protein 19
3swp_C	2e-26	4	148	15	143	NAC domain-containing protein 19
3swp_D	2e-26	4	148	15	143	NAC domain-containing protein 19
4dul_A	2e-26	9	148	17	140	NAC domain-containing protein 19
4dul_B	2e-26	9	148	17	140	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023913060.1	1e-108	protein NTM1-like 9 isoform X3
TrEMBL	A0A2I4F938	6e-48	A0A2I4F938_JUGRE; LOW QUALITY PROTEIN: NAC domain-containing protein 91-like
TrEMBL	A0A2N9EGM8	3e-47	A0A2N9EGM8_FAGSY; Uncharacterized protein
STRING	XP_008376843.1	4e-43	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2065	25	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	2e-39	NAC transcription factor-like 9