PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold13888-augustus-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 239aa    MW: 27852 Da    PI: 4.8549
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold13888-augustus-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605e-191259148
                                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                  +g+WT+eEd ll ++v+++G g+W++++r+ g++R++k+c++rw +yl
  maker-scaffold13888-augustus-gene-0.3-mRNA-1 12 KGPWTPEEDRLLSEYVNLYGEGRWSSVSRCTGLNRSGKSCRLRWVNYL 59
                                                  79********************************************97 PP
2Myb_DNA-binding45.91.3e-1466109247
                                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                   g  T+ E+ + v+ ++++G++ W+tIar+++ gRt++++k++w+++
  maker-scaffold13888-augustus-gene-0.3-mRNA-1  66 GQLTPLEEGIVVEMHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 109
                                                   667999***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.229763IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-22762IPR009057Homeodomain-like
SuperFamilySSF466893.56E-3010106IPR009057Homeodomain-like
SMARTSM007173.0E-171161IPR001005SANT/Myb domain
PfamPF002491.2E-171259IPR001005SANT/Myb domain
CDDcd001672.00E-121459No hitNo description
Gene3DG3DSA:1.10.10.605.6E-2263113IPR009057Homeodomain-like
SMARTSM007178.4E-1264112IPR001005SANT/Myb domain
PROSITE profilePS5129417.51764114IPR017930Myb domain
PfamPF002493.5E-1265109IPR001005SANT/Myb domain
CDDcd001672.28E-869110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGWGIPEQEW RKGPWTPEED RLLSEYVNLY GEGRWSSVSR CTGLNRSGKS CRLRWVNYLR  60
PGLKKGQLTP LEEGIVVEMH ALWGNKWSTI ARYLPGRTDN EIKNYWRTHF KKKGKPSRKQ  120
DMEKVQTLKQ NQAPKKQEQE PQEDSMKGET ISDEDTSDDQ MSSEVQEMIK EYPTLEDQCF  180
SVMSQDVASW LDTIREDDFC FSLWNLDDPK GNMDHDHQPT VFSCAADSNS FYNSGDFIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2541131107B-MYB
1h8a_C4e-251211327127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8554647e-65KP855464.1 Quercus variabilis microsatellite Qv1424 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023912232.11e-132transcription factor MYB48-like
TrEMBLA0A2N9HUW31e-115A0A2N9HUW3_FAGSY; Uncharacterized protein
STRINGEOY037854e-84(Theobroma cacao)
STRINGcassava4.1_029259m1e-84(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.14e-67myb domain protein 121