PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold14266-snap-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HSF
Protein Properties Length: 460aa    MW: 53245.6 Da    PI: 5.6564
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold14266-snap-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.23.9e-31141202102
                                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.TEEE---SS CS
                              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.gFkkvkdee 69 
                                               Fl k+ye+++d+ +++++swse+g sf+v+d+ efa+++LpkyFkh+nf+SFvRQLn+Y +F+  k + 
  maker-scaffold14266-snap-gene-0.8-mRNA-1  14 FLIKTYELVDDPITNSVVSWSESGCSFIVWDPPEFASDLLPKYFKHNNFSSFVRQLNTYvQFSIFKFKL 82 
                                               9**********************************************************7677777666 PP

                                               BTTTT.....XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                              HSF_DNA-bind  70 kksks.....kekiweFkhksFkkgkkellekikrkks 102
                                                   +     ++++weF++++F +g+++ll++i+r+k 
  maker-scaffold14266-snap-gene-0.8-mRNA-1  83 LVYYQgfrkiDPDQWEFANEEFLRGQRHLLKNIHRRKP 120
                                               554444444359***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.1E-5210118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3110118IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.2E-3511118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-151437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2714118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-155264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-156577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDGSQGSSSA PAPFLIKTYE LVDDPITNSV VSWSESGCSF IVWDPPEFAS DLLPKYFKHN  60
NFSSFVRQLN TYVQFSIFKF KLLVYYQGFR KIDPDQWEFA NEEFLRGQRH LLKNIHRRKP  120
VHSHSMQNQD HVSAPLTETE KQEFEVEINR LKHNNGLLQL ELQRHQSDNE MFELQMQSFG  180
EKLWNMEHRQ NHLMAFFAQL LKKPGFTSIL MQKSEIHSKK RRLSVPNHFH EREVEEKWSL  240
NFQTFQKEEL DAISAPTLNL ELIEKLDSSL NFWENFLHGV GEALNEEKYD IGAFSQPPPI  300
TVTEIHDTNV NNQPCSSISH AYSSPHSADT HSRASPELVE SMTRVDSPPL SSIYLGVDMM  360
PNYSGIDINM KPASALAVET LKERVEGTTT ALPTHPNDVF WEQFLTERPD SSYRQEIESE  420
RRDTDGRMRN NNAADHKKVW FYSNNVDNLT EQMGYLTPAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-25311819129Heat shock factor protein 1
5d5v_B3e-25311819129Heat shock factor protein 1
5d5v_D3e-25311819129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023887664.10.0heat stress transcription factor A-4b-like
TrEMBLA0A2N9J2M50.0A0A2N9J2M5_FAGSY; Uncharacterized protein
STRINGXP_004303209.11e-178(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141001620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.13e-77heat shock transcription factor A4A