PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold14328-snap-gene-0.0-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 201aa    MW: 24018.6 Da    PI: 6.7326
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold14328-snap-gene-0.0-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.24.6e-073405890
                                      FAR1 58 trtgCkaklkvkkek.....dgkwevtkleleHnHela 90
                                               ++gCka+l + ++k        w+vtk++ +HnH+l+
  maker-scaffold14328-snap-gene-0.0-mRNA-1  3 LKCGCKAHLSIILRKsfdvfPRDWHVTKFVVDHNHDLF 40
                                              58********9988766566689*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-5340IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
ESLKCGCKAH LSIILRKSFD VFPRDWHVTK FVVDHNHDLF SPSETILTDQ DSWITKAISK  60
ELLATKHAFF IWHITTKFSS WFTSIHQNQY SNWCMGFYKL YKLESCEDFD NQWFQVMTKY  120
DMLFNKHVIG LYQIKNFWVP CYLRDHFFGG MTTTGILESI NTFIKWFVSF HINLIQLIKQ  180
VDLTIEDIEQ TQSHDTMLET Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630748.12e-72protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A2U1PBC91e-74A0A2U1PBC9_ARTAN; FAR1 DNA-binding domain protein
STRINGAES746017e-61(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.14e-34FAR1-related sequence 11