PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold14418-snap-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 266aa    MW: 30567 Da    PI: 6.5227
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold14418-snap-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.83e-141461148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g+W+ eEd +l  +++++G  +W + ++  g+ R++k+c++rw++yl
  maker-scaffold14418-snap-gene-0.6-mRNA-1 14 KGAWSVEEDNKLRSYIQRFGHWNWQKLPKFAGLSRSGKSCRLRWLNYL 61
                                              79******************99************************97 PP
2Myb_DNA-binding52.51.1e-1667111147
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                               rg+ T+eE++ +++++++lG++ W+ Ia+ ++ gR+++++k++w+ +
  maker-scaffold14418-snap-gene-0.6-mRNA-1  67 RGNYTEEEELMIIKLHEELGNK-WSMIAASLP-GRSDNDIKNHWHAH 111
                                               899*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.818961IPR017930Myb domain
SuperFamilySSF466892.55E-2911108IPR009057Homeodomain-like
SMARTSM007172.3E-111363IPR001005SANT/Myb domain
PfamPF002491.6E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-211568IPR009057Homeodomain-like
CDDcd001671.32E-81661No hitNo description
PROSITE profilePS5129424.43862116IPR017930Myb domain
SMARTSM007176.3E-1666114IPR001005SANT/Myb domain
PfamPF002495.2E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2469115IPR009057Homeodomain-like
CDDcd001679.02E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVRAPFYDKN GLKKGAWSVE EDNKLRSYIQ RFGHWNWQKL PKFAGLSRSG KSCRLRWLNY  60
LQPDVKRGNY TEEEELMIIK LHEELGNKWS MIAASLPGRS DNDIKNHWHA HLKKRTKKNP  120
TTSKITLSSE AYLNDADTAR KTKTDSSVSS SPSYQVQESS QLPLETSSSE FSYLSFDNAP  180
LSGINWTAKD SLTTLETLEQ SFSDFWTEPF ILDNTYIQNN YPESLADGGF SASQSCYHEG  240
VDSIYEAMQE IENYQKINKK DPYLVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881680.10.0transcription factor MYB13-like
TrEMBLA0A2N9J0V51e-130A0A2N9J0V5_FAGSY; Uncharacterized protein
STRINGPOPTR_0019s14130.12e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-53myb domain protein 14