PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold15409-snap-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 123aa    MW: 14400.2 Da    PI: 8.703
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold15409-snap-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.11.9e-201196190
                                      FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71
                                              kf n+YA ++GF v k+k ++   ++ + +r++vCskeg++++ ++  ++++ +r +trtgC+a+++ +++
  maker-scaffold15409-snap-gene-0.2-mRNA-1 11 KFNNDYAIQIGFIVIKEKLRYA--KNDVRQREYVCSKEGFPQDGDHL-DDKKFKRLQTRTGCEASIQFTMT 78
                                              5889**************9999..4447***************9988.9999*****************99 PP

                                      FAR1 72 kdgkwevtkleleHnHela 90
                                               +g+w+vt+++ + nHel+
  maker-scaffold15409-snap-gene-0.2-mRNA-1 79 -NGEWKVTHFNPNRNHELV 96
                                              .****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-181296IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MVVHSEEEAY KFNNDYAIQI GFIVIKEKLR YAKNDVRQRE YVCSKEGFPQ DGDHLDDKKF  60
KRLQTRTGCE ASIQFTMTNG EWKVTHFNPN RNHELVKPEE RPFLRSNRKL TDAQLGLHLG  120
AST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023880098.15e-66protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2N9J9382e-45A0A2N9J938_FAGSY; Uncharacterized protein
STRINGXP_004305835.18e-35(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-16FAR1-related sequence 5