PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold15499-snap-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 338aa    MW: 36035.9 Da    PI: 8.4687
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold15499-snap-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.6e-173784148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              rg+WT+eEdell +++k+ G g+W+t +++ g+ R++k+c++rw +yl
  maker-scaffold15499-snap-gene-0.4-mRNA-1 37 RGPWTPEEDELLSNYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 84
                                              89******************************99************97 PP
2Myb_DNA-binding46.96.4e-1595135648
                                               HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                               ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  maker-scaffold15499-snap-gene-0.4-mRNA-1  95 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 135
                                               89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-222886IPR009057Homeodomain-like
PROSITE profilePS5129417.1663284IPR017930Myb domain
SuperFamilySSF466895.99E-2934131IPR009057Homeodomain-like
SMARTSM007171.5E-133686IPR001005SANT/Myb domain
PfamPF002492.3E-153784IPR001005SANT/Myb domain
CDDcd001671.29E-113984No hitNo description
PROSITE profilePS5129424.39785139IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2487140IPR009057Homeodomain-like
SMARTSM007172.7E-1389137IPR001005SANT/Myb domain
CDDcd001671.19E-1195135No hitNo description
PfamPF002491.1E-1395135IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSFPPHLCRL GGGGGGGGGG GSSGKSTPCC SKVGLKRGPW TPEEDELLSN YIKKEGEGRW  60
RTLPKRAGLL RCGKSCRLRW MNYLRPSVKR GQIAPDEEDL ILRLHRLLGN RWSLIAGRIP  120
GRTDNEIKNY WNTHLSKKLI SQGIDPRTHK PLNPDSSSSG GTGGNNNAKA SSSKTNRTVP  180
KPNNSSPATS PVVEESTPSG SGIMTIKDSG YLQSANLDHY HASGIVINGG YASLPNSDGS  240
GGIGLTSNNT GLSPEDEEDF NYGSDDVFSS FLNSLINEEP FAAQHQFQQQ TITNGIASVS  300
ADPLISITAS SFGLGAGWES ALMTSTFNQS DTKRPVND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26351395108B-MYB
1gv2_A4e-26351392105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-26351392105C-Myb DNA-Binding Domain
1msf_C3e-26351392105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892733.10.0transcription repressor MYB5-like
RefseqXP_023892734.10.0transcription repressor MYB5-like
SwissprotQ388505e-85MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2N9J4111e-168A0A2N9J411_FAGSY; Uncharacterized protein
STRINGEOY089081e-135(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-86myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]