PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold15525-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 90aa    MW: 9216.4 Da    PI: 10.364
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold15525-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like40.55.9e-135479126
                                       G2-like  1 kprlrWtpeLHerFveaveqLGGsek 26
                                                  k+rlrWt++LH+rFv+a++qLGG++ 
  maker-scaffold15525-augustus-gene-0.5-mRNA-1 54 KQRLRWTSDLHDRFVDAITQLGGPDS 79
                                                  79*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-105379IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-95479IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MYHAKKFSMT SLVPHKTQGV ELAVVPTVKN PASSASAAAA APSGSGSASA GAGKQRLRWT  60
SDLHDRFVDA ITQLGGPDSG SGIRMGDLIH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913836.18e-28myb family transcription factor PHL7-like isoform X1
RefseqXP_023913837.18e-28myb family transcription factor PHL7-like isoform X1
RefseqXP_023913838.18e-28myb family transcription factor PHL7-like isoform X2
RefseqXP_023913839.18e-28myb family transcription factor PHL7-like isoform X2
TrEMBLA0A2I4E5J43e-22A0A2I4E5J4_JUGRE; myb family transcription factor PHL7-like isoform X1
TrEMBLA0A2I4E5J82e-22A0A2I4E5J8_JUGRE; myb family transcription factor PHL7-like isoform X6
TrEMBLA0A2I4E5K12e-22A0A2I4E5K1_JUGRE; myb family transcription factor PHL7-like isoform X8
STRINGXP_008392505.12e-22(Malus domestica)
STRINGXP_008786820.12e-22(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.29e-11G2-like family protein