PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold15999-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bZIP
Protein Properties Length: 402aa    MW: 42723.9 Da    PI: 7.0404
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold15999-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.5e-10205253553
                                                   CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                        bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                                                   kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l   +
  maker-scaffold15999-augustus-gene-0.5-mRNA-1 205 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQ 253
                                                   9****************************************99887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.9E-16201265IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829203266IPR004827Basic-leucine zipper domain
PfamPF001701.7E-8205253IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-11205256No hitNo description
Gene3DG3DSA:1.20.5.1704.4E-10205259No hitNo description
CDDcd147038.00E-22206255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSTQMQDPPP SNPNSHNNHH QINSNNASHS HPPQPPKKSQ PLPAIANTTT SFMKGGGHHR  60
RAHSEVSFRL SDDMMMDLSP SDAFNGGGCG GGGGGGGGGS STASLDEIGS EDDLFSTYID  120
VDKLGGADQS GVEGNGNGNG EKSGGGGGGG GGGGGGGGRG RHRHSSSVDG SSTTTSSTGV  180
FGEIMDAKKA MPPDKLAELW NIDPKRAKRI LANRQSAARS KERKARYIQE LERKVQTLQT  240
EATTLSAQLT LFQRDTTGLS TENTELKLRL QAMEQQAQLR DALNEALKKE VERLKMATGE  300
MMSPSESFSM GMHQMQFAPS TFFPHPQQQG PAGHQNMQLP FNHSQSSMST HQMHQSNSHA  360
LSEMMQNDHL RRLQGLDISS QGSSLVKSEG PTLSASESSS TF
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023893165.10.0transcription factor RF2b-like
SwissprotO228731e-104BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A2I4FVN50.0A0A2I4FVN5_JUGRE; transcription factor RF2b-like
STRINGXP_004500364.11e-166(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06850.15e-84basic leucine-zipper 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]