PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold16081-augustus-gene-0.6-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 177aa MW: 20729.7 Da PI: 9.6774

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold16081-augustus-gene-0.6-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	121.5	7.5e-38	9	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFsk 63 lppG+rF+P+d e++ yLkkk++g++ ++ +i+ ++ yk ePw+Lpk +++++++ew+fF++ maker-scaffold16081-augustus-gene-0.6-mRNA-1 9 LPPGVRFSPKDLEVIELYLKKKITGNDEDT-WFIPVIEFYKDEPWNLPKksRIDTKDQEWFFFTE 72 79***********************888.78**********95357788999*** PP NAM 64 rdkkya...........tgkrknratksgyWkatgkdkevlskkgelvglkktLvfy...kgrap 114 ++ k++ +++r nr+tk+gyWk+tg+d+e++s +++l+g+kktLvf+ ++ ++ maker-scaffold16081-augustus-gene-0.6-mRNA-1 73 QSLKHQddnpkkrkrdqKQERVNRKTKAGYWKSTGTDREIKS-GESLIGMKKTLVFHtgtTKGKE 136 9999985555555444444477888*************.999*******55434678 PP NAM 115 kgektdWvmheyrl 128 kg t+Wvmhey+ maker-scaffold16081-augustus-gene-0.6-mRNA-1 137 KGIGTKWVMHEYST 150 8999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-39	6	156	IPR003441	NAC domain
PROSITE profile	PS51005	39.474	9	175	IPR003441	NAC domain
Pfam	PF02365	5.9E-24	10	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MEKLSLDHLP PGVRFSPKDL EVIELYLKKK ITGNDEDTWF IPVIEFYKDE PWNLPKKSRI 60 DTKDQEWFFF TEQSLKHQDD NPKKRKRDQK QERVNRKTKA GYWKSTGTDR EIKSGESLIG 120 MKKTLVFHTG TTKGKEKGIG TKWVMHEYST TQKDFDGKHP GQVGFCYSIC LIDVILT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-26	2	148	10	140	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-26	2	148	10	140	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-26	2	148	10	140	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-26	2	148	10	140	NO APICAL MERISTEM PROTEIN
3swm_A	5e-26	2	148	13	143	NAC domain-containing protein 19
3swm_B	5e-26	2	148	13	143	NAC domain-containing protein 19
3swm_C	5e-26	2	148	13	143	NAC domain-containing protein 19
3swm_D	5e-26	2	148	13	143	NAC domain-containing protein 19
3swp_A	5e-26	2	148	13	143	NAC domain-containing protein 19
3swp_B	5e-26	2	148	13	143	NAC domain-containing protein 19
3swp_C	5e-26	2	148	13	143	NAC domain-containing protein 19
3swp_D	5e-26	2	148	13	143	NAC domain-containing protein 19
3ulx_A	4e-26	8	148	14	138	Stress-induced transcription factor NAC1
4dul_A	4e-26	2	148	10	140	NAC domain-containing protein 19
4dul_B	4e-26	2	148	10	140	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023913058.1	1e-103	protein NTM1-like 9 isoform X1
Refseq	XP_023913059.1	1e-104	protein NTM1-like 9 isoform X2
Refseq	XP_023913060.1	1e-104	protein NTM1-like 9 isoform X3
TrEMBL	A0A2N9EGM8	8e-51	A0A2N9EGM8_FAGSY; Uncharacterized protein
STRING	XP_009351898.1	3e-44	(Pyrus x bretschneideri)
STRING	XP_009361256.1	4e-44	(Pyrus x bretschneideri)
STRING	XP_008381552.1	4e-44	(Malus domestica)
STRING	XP_006441279.1	6e-44	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2065	25	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	2e-38	NAC transcription factor-like 9