PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold16464-augustus-gene-0.2-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 347aa MW: 38251.9 Da PI: 9.1643

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold16464-augustus-gene-0.2-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.3	7.5e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrd 65 lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd maker-scaffold16464-augustus-gene-0.2-mRNA-1 15 LPPGFRFHPTDEELVVHYLKRKLASAPLPV-TIIAEIDLYKFDPWELPSKATFGEQEWYFFSPRD 78 79**************************.89***********8888999****** PP NAM 66 kkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ky++g r+nra++sgyWkatg+dk++l++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl maker-scaffold16464-augustus-gene-0.2-mRNA-1 79 RKYPNGARPNRAATSGYWKATGTDKPILTSnGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 ***********************99867788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-64	10	178	IPR003441	NAC domain
PROSITE profile	PS51005	62.213	15	178	IPR003441	NAC domain
Pfam	PF02365	2.4E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MESTDSSSGS QHPQLPPGFR FHPTDEELVV HYLKRKLASA PLPVTIIAEI DLYKFDPWEL 60 PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG TQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLVDNTSTSK PTTTASDATN KKGSLRLDDW VLCRIYKKNN 180 TQRPIMDQDK EDSMEAMIPT MPTMSMASQH NGKVPLPSKT ANYTALLDND FENYFDGILS 240 AEGMQNGSIS HNLATSSSKS STLAVKRTLP SQFWNEAGSL GSSSSGGKRF HGDLNSGSAG 300 LDENNSFVSL LNQLPQGASF HSNSLLGSLC DGVLRQQFQL PSINWNS

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MESTDSSSGS QHPQLPPGFR FHPTDEELVV HYLKRKLASA PLPVTIIAEI DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSNG TQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLVDNTSTSK PTTTASDATN KKGSLRLDDW VLCRIYKKNN  180
TQRPIMDQDK EDSMEAMIPT MPTMSMASQH NGKVPLPSKT ANYTALLDND FENYFDGILS  240
AEGMQNGSIS HNLATSSSKS STLAVKRTLP SQFWNEAGSL GSSSSGGKRF HGDLNSGSAG  300
LDENNSFVSL LNQLPQGASF HSNSLLGSLC DGVLRQQFQL PSINWNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-75	15	181	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-75	15	181	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-75	15	181	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-75	15	181	17	168	NO APICAL MERISTEM PROTEIN
4dul_A	1e-75	15	181	17	168	NAC domain-containing protein 19
4dul_B	1e-75	15	181	17	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023921724.1	0.0	NAC transcription factor 25-like
Swissprot	Q8GY42	1e-118	NAC25_ARATH; NAC transcription factor 25
TrEMBL	A0A2I4DIM4	0.0	A0A2I4DIM4_JUGRE; NAC transcription factor 25
STRING	EOY28334	1e-178	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1623	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-119	NAC domain containing protein 25