PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold16852-snap-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-YA
Protein Properties Length: 344aa    MW: 37686.1 Da    PI: 9.3566
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold16852-snap-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1011.2e-31171227158
                                 CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                               +ep++VNaKQy++Il+RRq+Rak+e +kk  +k rkpylheSRh hA+rR+Rg+gGrF
  maker-scaffold16852-snap-gene-0.5-mRNA-1 171 EEPVFVNAKQYHGILRRRQSRAKAELQKKA-IKVRKPYLHESRHLHAMRRARGCGGRF 227
                                               69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.3E-36169230IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.666170230IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-26172227IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-23173195IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860175195IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.0E-23204227IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MMPAKPGNGD RRLETCGPTA LQSTVYSHSW WAGVGSNGSL GESGSKSSSM EHLNGSVKNG  60
VMQLKANGQL DGGANFNKET QVTVASQSDG NIGLEHQHVN YVPSSTPKMG EHLDPNSNME  120
LVGHSIVLTP YMYSDPHYGG MLAPYGHQAM IPAQLYGMHQ ARMPLPLEME EEPVFVNAKQ  180
YHGILRRRQS RAKAELQKKA IKVRKPYLHE SRHLHAMRRA RGCGGRFLNT KKLDNDANPT  240
SEKGMNVGAN SSVQPTSKSG SEYLSNNGNG KLDSSHNKQE GSRSMIHNMH KAHNLSNGNS  300
NGHGLSSTYH SLFRDDKEGD YMGQQRESMH MNGIAREPEG ICPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-19171235266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927383.10.0nuclear transcription factor Y subunit A-1-like isoform X3
RefseqXP_023927384.10.0nuclear transcription factor Y subunit A-1-like isoform X4
TrEMBLA0A2N9HZW41e-177A0A2N9HZW4_FAGSY; Uncharacterized protein
STRINGXP_008231270.11e-132(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.37e-41nuclear factor Y, subunit A1