PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold17568-snap-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 240aa    MW: 27361.4 Da    PI: 4.6394
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold17568-snap-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.4e-154691148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              rg++T  E+e +v++++ +G++ W++Ia++++ gRt++++ + w+++l
  maker-scaffold17568-snap-gene-0.6-mRNA-1 46 RGNFTNKEEESIVKLHEAWGNK-WSKIASHLP-GRTDNEIENVWNTHL 91
                                              89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.0881640IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-71943IPR009057Homeodomain-like
SuperFamilySSF466891.15E-2027101IPR009057Homeodomain-like
PROSITE profilePS5129423.1734195IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-254495IPR009057Homeodomain-like
SMARTSM007177.9E-134593IPR001005SANT/Myb domain
PfamPF002491.4E-134691IPR001005SANT/Myb domain
CDDcd001672.24E-84891No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVSELARGRV NKFYWWVAIG LDSGLLRCGK SCRLRWINYL RPDVKRGNFT NKEEESIVKL  60
HEAWGNKWSK IASHLPGRTD NEIENVWNTH LKKKLTMKDG NVHGDELSSI TSSSSSSSNV  120
DSVNEIPFEA DVDFWNMLDN LDSVMSNEVQ HGEVNACQSS NFEEEGSKKV DENKKWLRYL  180
ENELGLDTME EEDKDISTKD AAQPLVPENV LVSDIFKPET NPDMGYFETW PSLPHSSSAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-16279540108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by light (PubMed:9839469). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920323.16e-76transcription factor MYB63-like
SwissprotQ9SA472e-45MYB58_ARATH; Transcription factor MYB58
TrEMBLA0A2R6QTC42e-62A0A2R6QTC4_ACTCH; Myb-related protein like
STRINGVIT_19s0085g00050.t011e-49(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.18e-43myb domain protein 63
Publications ? help Back to Top
  1. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Takeuchi M,Kegasa T,Watanabe A,Tamura M,Tsutsumi Y
    Expression analysis of transporter genes for screening candidate monolignol transporters using Arabidopsis thaliana cell suspensions during tracheary element differentiation.
    J. Plant Res., 2018. 131(2): p. 297-305
    [PMID:28921082]