PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold17927-snap-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 161aa    MW: 18488.1 Da    PI: 9.8314
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold17927-snap-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.71.1e-4081491128
                                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkk 67 
                                               lppGfrF+P+d+el+ +yLk+k++g++ ++  +i+e++ y+ eP dLp k  +++e++ew+fF+  ++k
  maker-scaffold17927-snap-gene-0.8-mRNA-1   8 LPPGFRFSPKDKELIEFYLKPKITGNDKDI-WFIPEIEFYEDEPCDLPtKaGIASEDQEWFFFTVLSQK 75 
                                               79*************************999.78**************95246777999*********** PP

                                       NAM  68 yatgkrknra...........tksgyWkatgkdkevlskkgelvglkktLvfykg...rapkgektdWv 122
                                               +++++ k+r+           tk+g+Wk+tgkd+e++s +g +vg+kk+Lvf++g    + kg  t+Wv
  maker-scaffold17927-snap-gene-0.8-mRNA-1  76 HQNDNSKKRKrgqkqelvnrqTKAGFWKSTGKDREIVS-GGIVVGMKKSLVFHRGstkGKGKGIGTNWV 143
                                               **9888888778899999999*****************.**************763114557789**** PP

                                       NAM 123 mheyrl 128
                                               mhey+ 
  maker-scaffold17927-snap-gene-0.8-mRNA-1 144 MHEYST 149
                                               ****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-435154IPR003441NAC domain
PROSITE profilePS5100540.6268161IPR003441NAC domain
PfamPF023654.0E-259148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MVVLSFDLPP GFRFSPKDKE LIEFYLKPKI TGNDKDIWFI PEIEFYEDEP CDLPTKAGIA  60
SEDQEWFFFT VLSQKHQNDN SKKRKRGQKQ ELVNRQTKAG FWKSTGKDRE IVSGGIVVGM  120
KKSLVFHRGS TKGKGKGIGT NWVMHEYSTT QKEFDGKHPG Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-28614713138Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913086.11e-105NAC domain containing protein 50-like isoform X1
RefseqXP_023913087.11e-105NAC domain containing protein 50-like isoform X2
TrEMBLA0A2N9EGM82e-51A0A2N9EGM8_FAGSY; Uncharacterized protein
STRINGEOY237343e-41(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-39NAC 014