PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold18254-snap-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 197aa    MW: 22065.2 Da    PI: 7.4408
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold18254-snap-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-173686155
                                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                              + y+GVr +k++ +Wv+e+r+p   +k+ r++lg+f t e+Aa+a++ a+ +l+g
  maker-scaffold18254-snap-gene-0.3-mRNA-1 36 PVYRGVR-RKNSRKWVCEVREP---NKKSRIWLGTFPTVEMAARAHDVAAIALRG 86
                                              68****9.6779******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-133686IPR001471AP2/ERF domain
PROSITE profilePS5103221.2983794IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-203796IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-303796IPR001471AP2/ERF domain
SMARTSM003801.2E-2637100IPR001471AP2/ERF domain
PRINTSPR003673.9E-73849IPR001471AP2/ERF domain
CDDcd000183.17E-283896No hitNo description
PRINTSPR003673.9E-76076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDLACMVNLS YVELMLASKN PKKRDGRKKF KETRHPVYRG VRRKNSRKWV CEVREPNKKS  60
RIWLGTFPTV EMAARAHDVA AIALRGRNAC LNFADSVWRL PRAALKAAEA FRPAELDDVS  120
GDDLTQRLGN TAAAVTVAAE AEIEPESVSF IDEEAVFDIP GLLRNMAEGM LLSPPPHWYG  180
GDNMETDSEV SLWSYSI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923081.11e-119dehydration-responsive element-binding protein 1A-like
SwissprotQ9FJ934e-62DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A2N9FUX01e-81A0A2N9FUX0_FAGSY; Uncharacterized protein
STRINGEMJ195113e-76(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.18e-63C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]