PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold18485-snap-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 157aa    MW: 17948.6 Da    PI: 9.3669
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold18485-snap-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-101563555
                                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                                       HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                                                ++E++RR++++  +++L +llP++   +sk  ls  +   +A++YIksL+
  maker-scaffold18485-snap-gene-0.2-mRNA-1 15 RRIIEKNRRNQMKILYSKLNSLLPNQ---NSKEaLSLPDQIDEAIKYIKSLE 63
                                              579**********************8...66667****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.40E-5864No hitNo description
SuperFamilySSF474598.11E-12878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.0431062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-101377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-71563IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDQQGSQSTS TKVERRIIEK NRRNQMKILY SKLNSLLPNQ NSKEALSLPD QIDEAIKYIK  60
SLETKLKKSK EKKEKLGING RKRSYTCTSF DAKSSLKSPK LEIREMGSTL EVVLITGLDN  120
QFLFYEIIHI LEEEQAEVLT ANFSISGDSI FHVVHAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023911086.19e-97transcription factor bHLH162-like
TrEMBLA0A2N9EEB23e-91A0A2N9EEB2_FAGSY; Uncharacterized protein
STRINGEMJ000634e-70(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-30bHLH family protein