PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold18635-augustus-gene-0.2-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

LBD

Protein Properties

Length: 169aa MW: 19208.6 Da PI: 6.3381

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold18635-augustus-gene-0.2-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.9	3e-37	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65 +CaaCk lrr+C++dCvlapyfp ++p+ f +vhk+FGasn++k+l++l+ + r a++++ +eA maker-scaffold18635-augustus-gene-0.2-mRNA-1 6 RCAACKSLRRRCPTDCVLAPYFPPTNPQGFSCVHKIFGASNITKMLEQLSVHLRAVAADCMSFEA 70 6************************************************************** PP DUF260 66 earardPvyGavgvilklqqqleqlkaelallkee 100 r++dPvyG+v++i++lq+q+ +++ el+++k e maker-scaffold18635-augustus-gene-0.2-mRNA-1 71 SSRVEDPVYGSVRIISQLQEQITEAQRELVKTKGE 105 ***************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.527	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-36	6	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MSNSSRCAAC KSLRRRCPTD CVLAPYFPPT NPQGFSCVHK IFGASNITKM LEQLSVHLRA 60 VAADCMSFEA SSRVEDPVYG SVRIISQLQE QITEAQRELV KTKGEIAFHN AQQQQQQQMQ 120 QLQMIHAIAQ EGEDQHSWLS SSQQDPFPNV NQQLIEDYKY SNTFFGFEF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-32	4	99	9	104	LOB family transfactor Ramosa2.1
5ly0_B	6e-32	4	99	9	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023929826.1	1e-101	LOB domain-containing protein 24-like
Swissprot	P59468	1e-42	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1U8B9X8	5e-60	A0A1U8B9X8_NELNU; LOB domain-containing protein 24-like
STRING	XP_010278070.1	9e-61	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-44	LOB domain-containing protein 24