PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold18790-augustus-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 585aa    MW: 67109.2 Da    PI: 9.3802
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold18790-augustus-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.64.9e-09542562425
                                                   ---SGGGGTS--TTTTT-SS-S CS
                                       zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                                                    lCr++a+ G C++Gd+CkF H
  maker-scaffold18790-augustus-gene-0.4-mRNA-1 542 QLCRYYAQ-GRCHFGDSCKFLH 562
                                                   69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.302.6E-1194142IPR003034SAP domain
SuperFamilySSF689062.38E-895142No hitNo description
PfamPF020377.6E-10107141IPR003034SAP domain
SMARTSM005131.3E-4107141IPR003034SAP domain
PROSITE profilePS5080010.026107141IPR003034SAP domain
Gene3DG3DSA:4.10.1000.101.0E-7535564IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-7539563IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23539565IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4539564IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6542562IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MAASEHTKEY PFEEEDEEYS ESEGSHSDHD SDDSDKDPSY TILEKTSAKF SDLSIKNNKK  60
SKARIVEDND MDYEGDSNEV EVVVPELDEK DKKSYEEVQK IIEAGQLEKL KVDQCKVYLR  120
KNGLRLTGNK DTLIQRIKEH LEILNGGGEN KYPASSFVLN CKGDACTGDV VMFEQNVYEM  180
FNIASRSASG PPCGKRIVAG RIVKESYGAA KQQHTFTVSD APKIEVLWSK GEKPLPPLHP  240
LLIKGRNLYR LKTLRQRWED EGNRQKVLME KHSRGFVARS DRESRIQEKE NKKMRGYRII  300
LVVLALVDAY ILCLYFRISK KETNRNQSQF NSISTVKCAI QPPQSDLLVN SRKPTFRPSQ  360
SGQNYNSEKS GFGPPKLDPS VNSGKPANSQ QQLVAFLDPG KLDMRPQQLG SFTHLGRPTE  420
QTRVAATQPR IAATQPQQQT NTTKSDYHHQ QPSQSFVESM HASNMERMYS GHQAYIQRNN  480
YQAHSDKYPN TYGTRGLSDR TSNRQPFTSM NQFPPRSPPP LTSVNHFPSM SLPRRQGHMQ  540
QQLCRYYAQG RCHFGDSCKF LHERRREYGQ RREDRWPCDQ RNLRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150425e-31AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901258.10.0zinc finger CCCH domain-containing protein 62-like
TrEMBLA0A2N9EQG40.0A0A2N9EQG4_FAGSY; Uncharacterized protein
STRINGEMJ173691e-175(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224