PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold19343-augustus-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 380aa    MW: 43128.9 Da    PI: 9.8702
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold19343-augustus-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-0891138247
                                                   SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
                               Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                                                   ++WT+ E + + +a + + ++   +W+++a+ ++ g+t  ++  +++++
  maker-scaffold19343-augustus-gene-0.2-mRNA-1  91 LKWTPAENKMFENALAVFDKEspdRWHKVAALIP-GKTVGDVMKHYRDL 138
                                                   69*****************99*************.***********986 PP
2Myb_DNA-binding47.73.5e-15202246347
                                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                   +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  maker-scaffold19343-augustus-gene-0.2-mRNA-1 202 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 246
                                                   8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-486137IPR009057Homeodomain-like
SuperFamilySSF466892.44E-1087138IPR009057Homeodomain-like
PROSITE profilePS512937.82288143IPR017884SANT domain
SMARTSM007177.2E-789141IPR001005SANT/Myb domain
PfamPF002491.7E-692138IPR001005SANT/Myb domain
CDDcd001671.47E-692138No hitNo description
PROSITE profilePS5129420.955195251IPR017930Myb domain
SuperFamilySSF466897.18E-17196250IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-17198250IPR006447Myb domain, plants
SMARTSM007172.7E-13199249IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-12199246IPR009057Homeodomain-like
PfamPF002497.4E-13202246IPR001005SANT/Myb domain
CDDcd001674.51E-11202247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
PVHHSLCIFI FLCFSLPFLC FHQYSKTSNL QFAIKKIYKS RNQYTKLLLL RGLGEVIGIG  60
NSLCMVNWDV MKWETEILSP NWGLDHESKS LKWTPAENKM FENALAVFDK ESPDRWHKVA  120
ALIPGKTVGD VMKHYRDLEV DVNNIEAGLV PIPGYTTPTS PFTLDWNSHA HTYDGFRQSF  180
SIAGKRSSSA RPAEQERKKG VPWTEEEHKL FLMGLKKYGK GDWRNISRNF VVTRTPTQVA  240
SHAQKYFIRQ LSGGKDKRRA SIHDITTVNL IDMKSPSPDN KRPPSPEHST VLHHHHNQQQ  300
SNSAAPGRTP FQWNQPNGGG GATMAFNQTY GNVFMTSPYN SFGIKLEGQN LHRGVAHESY  360
NIGPQNMVFQ MHSAQHYSHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-15931571175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0774543e-40AY077454.1 Antirrhinum majus MYB-like transcription factor DVL1 (DVL1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891261.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H71e-132DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2N9HXM90.0A0A2N9HXM9_FAGSY; Uncharacterized protein
STRINGEOY338011e-157(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-101Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]