PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold23274-augustus-gene-0.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

LBD

Protein Properties

Length: 170aa MW: 19279.7 Da PI: 6.4906

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold23274-augustus-gene-0.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.8	1.4e-36	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65 +CaaCk lrr+C+kdCvlapyfp ++p+++a+vhk+FGasn +k+l++lp + r a++++ +eA maker-scaffold23274-augustus-gene-0.3-mRNA-1 6 RCAACKSLRRRCPKDCVLAPYFPPTNPQRYACVHKIFGASNTTKMLEQLPLHLRAVAADCMSFEA 70 6************************************************************** PP DUF260 66 earardPvyGavgvilklqqqleqlkaelallkee 100 r+ dPvyG+v++i++lq+q+ ++++el+++k e maker-scaffold23274-augustus-gene-0.3-mRNA-1 71 SSRVGDPVYGSVRIISQLQEQIIEAQSELVKTKGE 105 ***************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.225	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-35	6	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MSHSTRCAAC KSLRRRCPKD CVLAPYFPPT NPQRYACVHK IFGASNTTKM LEQLPLHLRA 60 VAADCMSFEA SSRVGDPVYG SVRIISQLQE QIIEAQSELV KTKGEIAFHN AQQQLQQQQM 120 QQLQMINAVD QQGEDQPSWL SSSQQDPFTN VNQQLLEDYN YSNTFCGFEF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-32	7	106	12	111	LOB family transfactor Ramosa2.1
5ly0_B	6e-32	7	106	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023929826.1	1e-101	LOB domain-containing protein 24-like
Swissprot	P59468	2e-43	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1U8B9X8	2e-61	A0A1U8B9X8_NELNU; LOB domain-containing protein 24-like
STRING	XP_010278070.1	3e-62	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-44	LOB domain-containing protein 24