PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold24892-snap-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 208aa    MW: 24417.2 Da    PI: 6.077
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold24892-snap-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-182873148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              rg++T eE++l+++++++ G++ W+ Ia++++ +Rt++q+k++w+++l
  maker-scaffold24892-snap-gene-0.2-mRNA-1 28 RGNFTNEEEDLIIKLHEEAGNK-WSMIAKHLP-RRTDNQIKNHWHTHL 73
                                              89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.368122IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.2E-11835IPR009057Homeodomain-like
SuperFamilySSF466892.3E-24881IPR009057Homeodomain-like
PROSITE profilePS5129428.4872377IPR017930Myb domain
SMARTSM007171.3E-162775IPR001005SANT/Myb domain
PfamPF002492.2E-162873IPR001005SANT/Myb domain
CDDcd001676.60E-123073No hitNo description
Gene3DG3DSA:1.10.10.603.7E-233674IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MMFWTGLSRC GKSCRLRWLN YLHPDVKRGN FTNEEEDLII KLHEEAGNKW SMIAKHLPRR  60
TDNQIKNHWH THLKKHVKQN PKKSEVKEQF NETSPCKAKK NRESERESLH ASASSHQTLE  120
SSPLSTELSS SEHFSLRYDH PPVTGINWAE EDCLTSFETF EDTFGDFWTE PFVADNTNIP  180
DEFPISPYIL YHDDIDLFDQ VMQELPKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1887739108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873799.11e-129transcription factor MYB15-like
TrEMBLA0A2N9EJE99e-94A0A2N9EJE9_FAGSY; Uncharacterized protein
STRINGcassava4.1_023393m1e-61(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.15e-37myb domain protein 23