PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold25805-snap-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family DBB
Protein Properties Length: 207aa    MW: 22818.3 Da    PI: 4.681
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold25805-snap-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-06346441
                                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                               +C+ +e+ e++  C  ++  lC++C  + H        H++v 
  maker-scaffold25805-snap-gene-0.3-mRNA-1  3 IRCDVCEKVEAEVLCCADEAVLCRECDGKVHAAnklsqkHERVL 46
                                              58******99*******************9*6677888888765 PP
2zf-B_box27.28.1e-096299237
                                  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                                              + + C++++e    lfC +++  lC +C +++H g  H
  maker-scaffold25805-snap-gene-0.3-mRNA-1 62 QLPPCDLCQERIGYLFCLEDRASLCTNCDVSTHMGslH 99
                                              6789******9999******************976673 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.385147IPR000315B-box-type zinc finger
CDDcd000212.18E-6347No hitNo description
SMARTSM003361.2E-7447IPR000315B-box-type zinc finger
SMARTSM003361.5E-661108IPR000315B-box-type zinc finger
PfamPF006431.1E-56395IPR000315B-box-type zinc finger
CDDcd000213.60E-664107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MKIRCDVCEK VEAEVLCCAD EAVLCRECDG KVHAANKLSQ KHERVLLKQP SSSSSFSSSN  60
VQLPPCDLCQ ERIGYLFCLE DRASLCTNCD VSTHMGSLHA SSHQRFLNSG IHVALHSSID  120
NNINTGFNSR NSSLPMPETS FNFLDDNESR TAMTMEVEAG STETRATFSG ETQLATEPSW  180
SLDEIFDPNN LNYYDFSGVG SSRISSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018834173.15e-83PREDICTED: B-box zinc finger protein 23
TrEMBLA0A2N9J8581e-115A0A2N9J858_FAGSY; Uncharacterized protein
STRINGVIT_18s0089g01280.t014e-77(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1837746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-40light-regulated zinc finger protein 1