PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold27420-snap-gene-0.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Protein Properties

Length: 63aa MW: 7045.17 Da PI: 6.2285

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold27420-snap-gene-0.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.3	9.9e-12	1	57	36	98
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +tl de+g ++ + ++ lt+GWk+F+ a++L +gD vvF+l++ ++f +v ++r maker-scaffold27420-snap-gene-0.3-mRNA-1 1 MTLIDEDGDEYPTIY--LVHKI--GLTGGWKGFAVAHHLVVGDAVVFQLIRPTTF--KVYIIR 57 578888888888888..55553..39***********************997777..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.51E-14	1	59	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.47E-15	1	57	No hit	No description
PROSITE profile	PS50863	11.603	1	59	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-9	2	57	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.5E-12	2	59	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MTLIDEDGDE YPTIYLVHKI GLTGGWKGFA VAHHLVVGDA VVFQLIRPTT FKVYIIRVKG 60 SEE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023883748.1	2e-39	B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	2e-22	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A061FCQ7	3e-30	A0A061FCQ7_THECC; AP2/B3-like transcriptional factor family protein, putative
STRING	EOY14512	5e-31	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-24	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]