PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold31623-augustus-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 88aa    MW: 10155.7 Da    PI: 10.1209
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold31623-augustus-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-191461148
                                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                  +g WT+eEd++l+ +++q+G ++W++ a++ g+ R++k+c++rw++yl
  maker-scaffold31623-augustus-gene-0.2-mRNA-1 14 KGLWTPEEDQKLLTYIQQHGHRCWRSLAEKAGLQRCGKSCRLRWNNYL 61
                                                  678********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-25664IPR009057Homeodomain-like
PROSITE profilePS5129424.843965IPR017930Myb domain
SMARTSM007175.0E-151363IPR001005SANT/Myb domain
PfamPF002495.6E-181461IPR001005SANT/Myb domain
SuperFamilySSF466896.87E-231688IPR009057Homeodomain-like
CDDcd001674.18E-131761No hitNo description
Gene3DG3DSA:1.10.10.604.8E-86588IPR009057Homeodomain-like
PROSITE profilePS512947.046688IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MGRTPYCDAD GLKKGLWTPE EDQKLLTYIQ QHGHRCWRSL AEKAGLQRCG KSCRLRWNNY  60
LKPGIKRGSF SLQEDKTIIQ LHALLGNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-17128825100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318372.13e-47transcription factor MYB16
RefseqXP_023157377.13e-47transcription factor MYB16
SwissprotQ9LE635e-45MY106_ARATH; Transcription factor MYB106
TrEMBLA0A1D6E9446e-46A0A1D6E944_MAIZE; P-type R2R3 Myb protein
STRINGGRMZM2G032655_P011e-46(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.17e-47myb domain protein 16