PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold34656-augustus-gene-0.3-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Nin-like

Protein Properties

Length: 242aa MW: 28018.6 Da PI: 4.6059

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold34656-augustus-gene-0.3-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.8	4e-27	64	114	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s e++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl maker-scaffold34656-augustus-gene-0.3-mRNA-1 64 SKMLSKETISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 114 57899*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.473	48	135	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-22	67	114	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
LLDHVADDFF FSCGNRPEVW NEIVAGFEPQ NQALILSSSN EKKDEEVKEE RRKKRCREER 60 CSSSKMLSKE TISQYFYMPI TQAAKELNVG LTLLKKRCRE LGIRRWPHRK LMSLQTLIKN 120 VQCLSMSVFI TSTNAWVTQE LAKEEGEESE VKLREAIEIL EGERKLLEEI PDAQLEDNTK 180 RLRQACFKAN YKKRKLMGMV DSQSCSSSNQ SSMDGTGDEK EEEEDDEDDE EEEESLVGPL 240 FF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023886578.1	1e-106	protein RKD2-like
Swissprot	Q9M9U9	1e-55	RKD1_ARATH; Protein RKD1
TrEMBL	A0A2N9H073	1e-101	A0A2N9H073_FAGSY; Uncharacterized protein
STRING	EOY21863	5e-82	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-53	RWP-RK domain-containing protein