PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_107.g530.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C2H2
Protein Properties Length: 234aa    MW: 25775.1 Da    PI: 8.2718
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_107.g530.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053194215323
                                           ETTTTEEESSHHHHHHHHHH.T CS
                               zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                                           Cp+C+ ++++  +L+ H  + H
  model.Picochlorum_contig_107.g530.t1 194 CPHCDVVCKDAVQLVAHVEKwH 215
                                           *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183108.37E-13855No hitNo description
PROSITE profilePS510398.039955IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.0E-111056IPR000058Zinc finger, AN1-type
PfamPF014286.9E-131248IPR000058Zinc finger, AN1-type
SMARTSM001541.0E-91251IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.04E-693148No hitNo description
Gene3DG3DSA:4.10.1110.108.5E-795150IPR000058Zinc finger, AN1-type
PROSITE profilePS510396.926100149IPR000058Zinc finger, AN1-type
PfamPF014286.8E-7103143IPR000058Zinc finger, AN1-type
SMARTSM001540.11103145IPR000058Zinc finger, AN1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDFDYLGIGT NCQFQECKQL DFLPFRCSGC NKIYCGEHRH AKDHACSSPP TAAEEKTIVI  60
CPVCARGVRV AEGLEADYVI DRHMQSGECD PQNYKRVHGK RRCPVKGCRE RLTTVNSYQC  120
PHCGTETCLR HRYKASDHAC TGRKSSSHQS FTSSFVSTCR NMLSSSIGQS HSVGSSKNKA  180
ARGHGRHVRE AAACPHCDVV CKDAVQLVAH VEKWHSNVSG RCPPQEDTAC VVM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP481244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.17e-33C2H2 family protein