PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_108.g629.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family YABBY
Protein Properties Length: 193aa    MW: 21424.5 Da    PI: 6.0255
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_108.g629.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY25.15.4e-086516017108
                                 YABBY  17 fCntilavsvPstslfk...vvtvrCGhCtsllsvnlakasqllaaeshldeslkee............llee 74 
                                            C  +l v vP +        + +rC  C +llsv+l   ++++  +++l+   +++            +   
  model.Picochlorum_contig_108.g629.t1  65 ECASLLRVMVPESVHRLappSLVIRCAGCGKLLSVSLPAETYIQHRTKQLQMMQEKQdqlkqlqlleqeI--- 134
                                           4999*******8765431225789***************9999998888887654444445455433333... PP

                                 YABBY  75 lkveeenlksnvekeesastsvsseklsenedee 108
                                                   +++ +  e++++s ++++++e++++ 
  model.Picochlorum_contig_108.g629.t1 135 --------QQKRKFLEEQMKSFQANTVEEKDTNR 160
                                           ........44444444444333333332222211 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.8E-565161IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MLGGYSKTEQ HMHPGNAAVD ISVRAGTADA QNVAAGMMSQ KQQIELILRS CMEPMEINVA  60
CENPECASLL RVMVPESVHR LAPPSLVIRC AGCGKLLSVS LPAETYIQHR TKQLQMMQEK  120
QDQLKQLQLL EQEIQQKRKF LEEQMKSFQA NTVEEKDTNR QSGSHRAEDQ EEALVTPVLQ  180
RGLKPSESPE SA*