PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_111.g391.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family NF-YB
Protein Properties Length: 100aa    MW: 11353.9 Da    PI: 8.7197
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_111.g391.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB132.41.5e-411811797
                                 NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91
                                          mk+ lP+naki+kdak++vqecvsefisf+tseasdkcqrekrktingddllwa+  l f++y++pl++yl+k+r
  model.Picochlorum_contig_111.g391.t1  1 MKRSLPKNAKIAKDAKDVVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMDVLFFKEYLQPLTLYLQKFR 75
                                          9************************************************************************** PP

                                 NF-YB 92 elegek 97
                                          e+e+++
  model.Picochlorum_contig_111.g391.t1 76 EAEKNE 81
                                          **9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.51E-31192IPR009072Histone-fold
PfamPF008083.8E-21155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.5E-41195IPR009072Histone-fold
PRINTSPR006155.3E-171937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.3E-173856No hitNo description
PRINTSPR006155.3E-175775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MKRSLPKNAK IAKDAKDVVQ ECVSEFISFI TSEASDKCQR EKRKTINGDD LLWAMDVLFF  60
KEYLQPLTLY LQKFREAEKN ENKSQGHKAS THAESAKGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A7e-351761893NF-YB
4awl_B7e-351761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A7e-351761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002949581.13e-44hypothetical protein VOLCADRAFT_117284
SwissprotO233109e-42NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
SwissprotQ9SLG06e-42NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA0A0I9QPW05e-43A0A0I9QPW0_VOLCA; CCAAT-box binding factor HAP3-like protein
STRINGXP_002949581.11e-43(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20231616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.32e-44nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Han X, et al.
    Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis.
    J. Exp. Bot., 2013. 64(14): p. 4589-601
    [PMID:24006421]
  2. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  3. Hossain MA, et al.
    Identification of Novel Components of the Unfolded Protein Response in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 650
    [PMID:27242851]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]