PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_111.g401.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C3H
Protein Properties Length: 303aa    MW: 34007.6 Da    PI: 7.0957
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_111.g401.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.32e-11165190126
                                           --S---SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                           y    C+++ +tG+C +Gd+CkF H+
  model.Picochlorum_contig_111.g401.t1 165 YQPDVCKDYKETGYCGFGDSCKFLHD 190
                                           66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.35E-9162195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821164192IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7164191IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9165190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-12165195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.3E-10224282IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.3E-6237283No hitNo description
SuperFamilySSF578501.33E-10237283No hitNo description
CDDcd001622.03E-5238282No hitNo description
SMARTSM001843.7E-6238278IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.026238278IPR001841Zinc finger, RING-type
PROSITE patternPS005180256265IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAVSQGKEED GTTRTKPRKR NLRKKRKLSS SSSESEGEEH ALATAVVSKG KKQLGDKNAM  60
AFSTRRKQDA EHLSGMAFES SGMDARHDYL VNDATRVLDM PNEGERGAGR DQGSDKDATG  120
DGTTYKGMKG YKDYREGFRR EDERGGSHGP KKPSANFRMS VLVDYQPDVC KDYKETGYCG  180
FGDSCKFLHD RGDYKAGWQL DRDWEEEQKA RKERERQGWV DNDEESNEES DDDLPFACFI  240
CREPWEKCQD PVVTKCGHYF CEQCALKENA KTGKCFVCGE PTKGIFNVAH AIIKREKAKS  300
GG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-4894302116324RING finger protein 113A
5z58_M4e-4894302116324RING finger protein 113A
6ff4_t4e-4894302116324RING finger protein 113A
6ff7_t4e-4894302116324RING finger protein 113A
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11324RTKPRKRNLRKK
22127LRKKRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396996.13e-85Zinc finger CCCH domain-containing protein 51
SwissprotQ8GX844e-73C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A087SEF67e-84A0A087SEF6_AUXPR; Zinc finger CCCH domain-containing protein 51
STRINGA0A087SEF61e-84(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.14e-62C3H family protein