PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_111.g409.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family Whirly
Protein Properties Length: 229aa    MW: 25184.5 Da    PI: 9.5121
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_111.g409.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly109.72.3e-34501892138
                                Whirly   2 vyktkaalkvkavrptfealdsgn.lklkraGglllelanataerkydWekkqsfalsatevaelvd.laske 72 
                                           vyk+++a+++k ++pt+e + +g+ ++++r+G++lle+a++ +er ydW++k++fa+ a e +++++ + +  
  model.Picochlorum_contig_111.g409.t1  50 VYKGRGAMSLKLIKPTWERISTGSgIRVSREGTVLLEFAQSKGERVYDWDNKGTFAMNAVECGDILEaIETST 122
                                           9******************98875389***************************************9999999 PP

                                Whirly  73 sceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvk..gnesfsvPvskaefavlrsll 138
                                             +ffhdp   gs +G v k+lk  P  d sG+f++l v+ +     +  ++   vs+ae  v++++l
  model.Picochlorum_contig_111.g409.t1 123 ERSFFHDPNRMGSAQGAVTKTLKFSPARD-SGYFFSLYVNDKSAGgvVTSRYDTAVSNAELRVIQQVL 189
                                           9*************************998.9*********9987522578899***********9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.108.0E-4840210IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.28E-2444206IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.0E-3750188IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAQSLIQRLR LQNPSKAQRT VGRVTRLFTT RAAAFDADVS KINVYTAYTV YKGRGAMSLK  60
LIKPTWERIS TGSGIRVSRE GTVLLEFAQS KGERVYDWDN KGTFAMNAVE CGDILEAIET  120
STERSFFHDP NRMGSAQGAV TKTLKFSPAR DSGYFFSLYV NDKSAGGVVT SRYDTAVSNA  180
ELRVIQQVLQ FAIPRILGFD EMFAGAPEVK DSTFAATDYD PPPPPPPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A2e-30362003164StWhy2
3n1i_A2e-30362003164protein StWhy2
3n1j_A2e-30362003164Protein StWhy2
3n1k_A2e-30362003164protein StWhy2
3n1l_A2e-30362003164protein StWhy2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.14e-29WHIRLY 2