PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_128.g670.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family bZIP
Protein Properties Length: 276aa    MW: 30019.8 Da    PI: 9.3915
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_128.g670.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.53.8e-15212269562
                                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                                           +++rr+ +NRe+ArrsR+RK++ + eLe+kv +L++e ++Lkk+  +l++ +ak ++e
  model.Picochlorum_contig_128.g670.t1 212 RKQRRMLSNRESARRSRKRKQEHMMELENKVSKLTEECSELKKRCRMLEEIIAKKDAE 269
                                           689**************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.1E-13208272IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.266210273IPR004827Basic-leucine zipper domain
PfamPF001701.2E-12212267IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.47E-12212263No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-13212265No hitNo description
CDDcd147023.21E-15213261No hitNo description
PROSITE patternPS000360215230IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAGTTASVAA EKNETNRAER VYSGNLGDDL LTMIRQSSLG QPSAFAECQP GISDDAFDDL  60
LKRLPSGSLN LNLDGFMDMD NKNEAKNLSK ASSLDLLKAY FTSQRSTPQD LEALGLSKSN  120
GAKQKKIKEE DATSLSGSTA IKSDAGKGDK TRPIEALGNT TLSPITAFAD PQLLNARAVP  180
ASAIGWSSKK SSSEDYGGNS PGNEMDTNAL KRKQRRMLSN RESARRSRKR KQEHMMELEN  240
KVSKLTEECS ELKKRCRMLE EIIAKKDAEL QRVAP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209215LKRKQRR
2210230KRKQRRMLSNRESARRSRKRK
3224230RRSRKRK
4224231RRSRKRKQ
5226231SRKRKQ
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP522889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.14e-11abscisic acid responsive elements-binding factor 2