PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_128.g672.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C3H
Protein Properties Length: 733aa    MW: 79975.9 Da    PI: 10.0751
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_128.g672.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.1e-07683704526
                                           --SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                           +C +f r   C +Gd+C+FaH+
  model.Picochlorum_contig_128.g672.t1 683 ICAYFNRPQGCIHGDKCRFAHV 704
                                           8********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.930.106.2E-14154247IPR017923Transcription factor IIS, N-terminal
SuperFamilySSF476763.92E-11155245IPR017923Transcription factor IIS, N-terminal
PROSITE profilePS5131913.671164239IPR017923Transcription factor IIS, N-terminal
SMARTSM005092.2E-4165238IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
PfamPF087116.2E-7185235IPR017923Transcription factor IIS, N-terminal
PROSITE profilePS5010312.605678706IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-5683704IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4683703IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.98E-5684709IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MADETGHLSE DMPNSELMCD DLEIRLDSDS DMDDAPSSSA EPESAAGTSA PKRTRTFKGR  60
SKPSEKCGKC KHCLNPHWKQ RCLEAKQGDA RAVENPSNNG DSFVAMLGHI LRSDGGVDGV  120
DKLPRLLRLF ESATEWGHRR ALLKVLHNSG ADLHKAFIAN KGLMKVEAWL DTAILEGRSK  180
FVADALSALA LLPITLAALR KPSELGRMVG KLRKSDFEES IRSQARILIA KWKALADVKP  240
TSSTPAQHKP IAASAATQNA SESKNKVEPQ KKTKSTQQGL GEADIFGSKQ EKKPSNQSNA  300
AQRVRVVASN AAKSQIAGSK RSTSVARVSA SPLDSLSDQG YQQPARSQSQ SPAKSYTPLL  360
APANTALAAN LASLTASERA KLAADSVPEE PKRQKRKLSG KKLRWAPEEE LTAVRLFLKH  420
QPPCKVSADP NDDDDGAPQE DKRDVASDVG HESFERAAKQ QHHSEAQALK DFKAQEEEER  480
KVVEERLRTM KPGTEWRDPP MIPQDIFEEC GTAASGEEST ERVARKKQWE GVPQVTYSSI  540
QQAPPCPAEP PVGASMPLQP LHLVPKIPLS VEEARMLASA RTVTAKKPPV VPMNGRLPAQ  600
STVPARPPMT MQGLHPPKQQ PQMPVRQPIV QQRPHRPMAS QKLQPMLGLH GANKTQQSQP  660
MPAATQQRAP RPMLNNIQST QNICAYFNRP QGCIHGDKCR FAHVRVPDNN GAVKRPPNPP  720
GEEGPRKMVK QV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1390397PKRQKRKL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP481033