PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_152.g828.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C3H
Protein Properties Length: 285aa    MW: 32131.9 Da    PI: 6.6433
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_152.g828.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81e-09109134127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           ykt+ C+ ++  G C++Gd+C++aHg+
  model.Picochlorum_contig_152.g828.t1 109 YKTRMCNKWRS-GSCPFGDKCTYAHGQ 134
                                           9********99.*************97 PP
2zf-CCCH375.6e-12172197126
                                           --S---SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                           ykt+lC +f+++G+C  G+ C+FaHg
  model.Picochlorum_contig_152.g828.t1 172 YKTRLCIRFMQSGYCVKGNACTFAHG 197
                                           9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.7E-18102140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-9107139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004108135IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6108134IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-7109134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-13169202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-10169203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521171199IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-5171198IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-9172197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEEDGTQQQQ HRESPKRRTS GQQQQGGAPY PQMGYMPHMG TPMHPQHMRH PEMMQQPMMM  60
PQFQPYGPAA MVTYPGNMMP VPMPMPQATM MGGMPQAQMG VQPQGNVFYK TRMCNKWRSG  120
SCPFGDKCTY AHGQHELRRV SPELLAQVQE DAHPQRHVQE DPDQKTKSQM YYKTRLCIRF  180
MQSGYCVKGN ACTFAHGYED LRLLGQDNNK VADTHDDSDD DEQNDESRRR VNTQEQARAR  240
AMSAVAGVGQ AEQVTTDADM RHATASLEDG RAFRENPYAD SGGE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1ZPL33e-35A0A1D1ZPL3_AUXPR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP551277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.15e-12C3H family protein