PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_155.g704.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family G2-like
Protein Properties Length: 411aa    MW: 45955.4 Da    PI: 6.6855
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_155.g704.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.93.9e-32139193155
                               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                           k+rlrWtpeLH+rFv av++LGG+ekAtPk il+lm+v++Lt++h+kSHLQkYRl
  model.Picochlorum_contig_155.g704.t1 139 KARLRWTPELHQRFVGAVHSLGGPEKATPKGILNLMNVEDLTIYHIKSHLQKYRL 193
                                           68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.863136196IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.7E-31136195IPR009057Homeodomain-like
SuperFamilySSF466892.15E-17137196IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-25139193IPR006447Myb domain, plants
PfamPF002492.2E-8141192IPR001005SANT/Myb domain
PfamPF143791.7E-15269312IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MKTPGEDNPD HQNDAQLLDL EYWPQLDLAP ELFNLEWIGG EQEHHHINGP LPGSPHQGKL  60
GISLDGSRLV SRGSPKEHND EVKRDVEPMH VVDDIAIFQD VDRGMDLQLD CGEDRSFMEN  120
MDSGLEERKQ RRRVQSSSKA RLRWTPELHQ RFVGAVHSLG GPEKATPKGI LNLMNVEDLT  180
IYHIKSHLQK YRLNIKVPGE EKHRREEEKE SVQKSKRRIS RKKSTQPGLD HQGSLDREGS  240
LPHKASTSVQ QTTSIDSLTQ RGSVEEHRIQ LERALLVQME MQKKLHEQLE AQRKLQMNLE  300
QHGRYISSLL ESTGLAGTVH GSQIDENGNK KAVPGDDFGN LKTSLNSMGM SAEKLKNLYI  360
KNIGSNISAA PSSDHFSHSI LMNGELAGAP GAQKGGDYYI QEEPGGRDGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-22139192154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-22139192154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-22139192154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-22139192154Protein PHOSPHATE STARVATION RESPONSE 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1111645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.16e-31G2-like family protein