PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_16.g153.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family bZIP
Protein Properties Length: 245aa    MW: 27100.5 Da    PI: 6.8107
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_16.g153.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_154.32.9e-17175236162
                                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                                          ek++k+ rrkq+NRe+ArrsR+RK+ae+e+L+++  +L+ae ++L+ke  elk ++  l+s+
  model.Picochlorum_contig_16.g153.t1 175 EKDIKKLRRKQSNRESARRSRLRKQAECEHLQNENFTLKAEVDRLRKEQIELKTTITVLQSQ 236
                                          899***************************************************99988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-13173240No hitNo description
SMARTSM003381.7E-13175239IPR004827Basic-leucine zipper domain
PfamPF001703.0E-14175236IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.013177240IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.19E-10178237No hitNo description
CDDcd147029.07E-15180237No hitNo description
PROSITE patternPS000360182197IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDGEGPRNAV EIPDVAQASD EMRKHWEQIQ ENMLKSFPNT LPFGNGAMAA PFPMPPALMP  60
LAMMQMSNLA SLYSSGLVGG EVPSVEQKTQ TENATNNNDK TLSGLNLLAS TVGQPTTNNN  120
FPGINSPLVS EKYSGDAKTG KSDSQQAKRS RSLSLTQDQD AEIYLDEATI AGMDEKDIKK  180
LRRKQSNRES ARRSRLRKQA ECEHLQNENF TLKAEVDRLR KEQIELKTTI TVLQSQLLEL  240
RKHA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184KLRRKQ
2191197RRSRLRK
3191198RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4426911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-16G-box binding factor 1