PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_16.g41.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C3H
Protein Properties Length: 204aa    MW: 22760.4 Da    PI: 5.5264
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_16.g41.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.6e-11118141326
                                         S---SGGGGTS--TTTTT-SS-SS CS
                             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                          + C+ff ++G C yG++CkF H+
  model.Picochlorum_contig_16.g41.t1 118 PRVCQFFVKNGSCAYGSSCKFQHP 141
                                         589********************9 PP
2zf-CCCH25.62.1e-08160185227
                                         -S---SGGGGTS--TTTTT-SS-SSS CS
                             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                         ++++C+ff+++  C yG +C++ H++
  model.Picochlorum_contig_16.g41.t1 160 GEPPCKFFLKYRRCAYGHTCRYDHPE 185
                                         689*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.61115143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-7117143IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6117142IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8118141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-7118142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.004158186IPR000571Zinc finger, CCCH-type
SMARTSM003560.086158185IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-6160185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-5162185IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVPALTMGGS SYVQPEHDDS YGHPSSPPNT SSGYGSYSGT SPVPVMYGAS MMPMYMPPAM  60
IAPRELPPYV SKKKPIQDEA DDDDDMNDDT NDDMISNKDD ANDSSMQKEK PPQPSSDPRV  120
CQFFVKNGSC AYGSSCKFQH PLELAPPVFY NSFGLPRRSG EPPCKFFLKY RRCAYGHTCR  180
YDHPEIRGLL PHQQFDHQNA LWY*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP623277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.27e-18C3H family protein