PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_163.g722.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C2H2
Protein Properties Length: 230aa    MW: 24457.1 Da    PI: 10.5213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_163.g722.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-051536323
                                          ETTTTEEESSHHHHHHHHHH.T CS
                               zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                                          C +C++ F++  +L +H+++ H
  model.Picochlorum_contig_163.g722.t1 15 CFYCDREFNQEADLFTHQKSkH 36
                                          99*****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559.91336IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801536IPR007087Zinc finger, C2H2
SMARTSM003550.193760IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803960IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVRKRKKVEV VKPWCFYCDR EFNQEADLFT HQKSKHFKCP NCTKRLGSAR ALSIHCLQVH  60
KTGIQEIPEA KEGRKDPKWE IVGSVGIPPG MVRGGPVPPR GGGPLPASHT HVGSGPTAAV  120
RPRLAYPPYP SGGGVMMPPP PVYGGVPPPP YYGAPPLHPP PPASSSLHGR PPVPPPPGGG  180
GGGHPPRPPP PAAAMPSSSQ QQRQQPTQYV SAPAHIHRKP TRAKQDDDT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
126RKRKK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41351011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.12e-21C2H2 family protein