PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_168.g871.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C3H
Protein Properties Length: 500aa    MW: 55310.4 Da    PI: 6.5987
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_168.g871.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41.1e-07106127426
                                           ---SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                           ++C+++ r G+C +Gd+C+++Hg
  model.Picochlorum_contig_168.g871.t1 106 VPCPDYKR-GICLRGDTCPYSHG 127
                                           69******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.2E-499130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352102129IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-7102128IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-5106127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5134166IPR000571Zinc finger, CCCH-type
SMARTSM003562.9137160IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEFLLPQDLL SPTSQGHGMH AVQQQSLGGH LEQHMMMQRQ QEMNIGQFNT TELNVPEYAS  60
DGFRMFHFKV ERCSKRFVHD WRSCPFAHPT ENARRRDPRQ FKYVPVPCPD YKRGICLRGD  120
TCPYSHGVYE CWLHPAKYKT QLCKEGPRCK RPVCFFAHSV GDLRQPTHVF QDDAQNEAEI  180
PKTVAAALMQ HVQADAQSIQ SSEQEEALNN MGKSNEKRSE GSSSDSGNNN EDVGDSSQNV  240
MLQNEDSTKS SQDLLPAVER MQGFPATPQA QRKERSAAMP TTDNVSLLGI GSPQEEDKVR  300
PVSLDTQIGY RANGLERKSM DGAWTNSNTT SQLMQGVPVN EQPLVSTQGP RMSNAVARKL  360
GLAPTRTSSA SSAGIMSPQR RSFDLVQQQQ QHMNARRSLD GYNDYGNVDR FPLSSNHPDA  420
MHPSLLAAMN GIEYAHAAHW LESSNPAGAG NLNSIVNSMG SLNFRDNAGS FQGNGSQMSQ  480
GLTLPLNLDE YESAGERHA*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.15e-49CCCH-type zinc finger protein with ARM repeat domain