PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_196.g913.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family bZIP
Protein Properties Length: 277aa    MW: 30462.6 Da    PI: 9.9913
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_196.g913.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.71.4e-14207259254
                                           XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                                           +++k   r+++NRe+A rsR+++++++ eLe kvk+L+  Nk+L++++ +l k
  model.Picochlorum_contig_196.g913.t1 207 RSVKSDERAMRNRESAARSRAKRLEYTHELEVKVKTLKDVNKELREKIIKLAK 259
                                           6788999*****************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001702.5E-12207259IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.795208259IPR004827Basic-leucine zipper domain
SMARTSM003381.4E-6209270IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-9210257No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-12212258No hitNo description
PROSITE patternPS000360214228IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MQQNVDWDAL LRSPATETVQ HDHLSDIQLG QLAEGIENLE AELPPGVVEG SSLAPGLRDV  60
RLAEVIGPVI QGQETSTLNV AQCLDLWSRG LNASGPSHAG VVPQQCYPPM AAHAGQHVIQ  120
GSVLNIQLAP LHNRIDEEKE MAAMNRAERQ RKRKEKQEES VRRKMSAHAS GSEMVPIPTG  180
LSSSQITVGA ENQSKEGIKT NGPRRRRSVK SDERAMRNRE SAARSRAKRL EYTHELEVKV  240
KTLKDVNKEL REKIIKLAKA PADPNGALRR TRTMPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155RKRKEK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00409DAPTransfer from AT3G56850Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP939144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.14e-12ABA-responsive element binding protein 3