PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_223.g587.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family ERF
Protein Properties Length: 236aa    MW: 27022.5 Da    PI: 10.25
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_223.g587.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23.1e-11132175149
                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                                           s+++GV++  +++rW+A+   +++ng  k  slg f+++e Aa+a++++
  model.Picochlorum_contig_223.g587.t1 132 SRFRGVHRTVSTKRWEAQ---FRKNG--KPTSLGCFDSEESAARAYDKM 175
                                           789***************...88887..*******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-9132177IPR016177DNA-binding domain
PfamPF008476.7E-8132175IPR001471AP2/ERF domain
PROSITE profilePS5103211.495133195IPR001471AP2/ERF domain
SMARTSM003801.5E-4133201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-7133177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDVAGSNLSV SSKAEENQHP TVDIHNFLED RLQKCLEKDI FALPLAYVRS ENPLVSQMKI  60
QDVQNRIQEH RHEVPSWDTW ESEKSRRESV TAHSVFAKLR PIESLSPRKV EPGLESPRLG  120
KTKSTSKRPF TSRFRGVHRT VSTKRWEAQF RKNGKPTSLG CFDSEESAAR AYDKMILWSE  180
LHGKAGAKPS VMNFDPEQYK QIAPWLQRIS QDGLLQALRR EGREEAARRT NDNKK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011402302.11e-44AP2-like ethylene-responsive transcription factor SNZ
TrEMBLA0A087SU453e-43A0A087SU45_AUXPR; AP2-like ethylene-responsive transcription factor SNZ
STRINGA0A087SU455e-44(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP27461414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-07AP2 family protein