PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

model.Picochlorum_contig_27.g81.t1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum

Family

Protein Properties

Length: 239aa MW: 26513.2 Da PI: 10.1059

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
model.Picochlorum_contig_27.g81.t1	genome	Rutgers	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	45.6	1.4e-14	103	145	4	46
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 +i+le++ +y +lp +A+k Lg++lT Kr CR GI+ WP+ model.Picochlorum_contig_27.g81.t1 103 DITLEEVLQYVHLPSSEASKRLGLGLTSFKRVCRSVGIMSWPY 145 79****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.948	87	173	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-13	104	146	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MSKGTSSDHT GDTNEFCGHG NGYRGVISLL EVLKNLDHQA IIPTGTNLGA PGPSKGQPPS 60 FARRPLNLPK RDQGAQTGQV TRRVRLNRSG FRKRTREGRY LSDITLEEVL QYVHLPSSEA 120 SKRLGLGLTS FKRVCRSVGI MSWPYKAGKQ PSREELITMA LESGSKQSRE RAEDPAVLTQ 180 GAEASLRQLI AFCTGDFREF LIFKLRQFLE TSYTMRYDCG FTIFNDPILL ALVTKLSE*

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-08	RWP-RK domain-containing protein