PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_279.g612.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family MYB_related
Protein Properties Length: 636aa    MW: 72691.1 Da    PI: 8.4903
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_279.g612.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.9e-09581627347
                                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
                       Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                                           +W++eE+ +lv+a k++++    +W+++a+ +g  +t   c  r+  +
  model.Picochlorum_contig_279.g612.t1 581 KWSKEEEMKLVKALKEFPKTledRWDRVAAAVG-SKTKVACAIRFKEL 627
                                           7******************9*************.*******9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.6E-21103211IPR001623DnaJ domain
SuperFamilySSF465651.7E-20107183IPR001623DnaJ domain
SMARTSM002712.4E-18110179IPR001623DnaJ domain
CDDcd062571.46E-13111176IPR001623DnaJ domain
PfamPF002261.4E-18111184IPR001623DnaJ domain
PROSITE profilePS5007619.11111187IPR001623DnaJ domain
PRINTSPR006251.0E-7134149IPR001623DnaJ domain
PRINTSPR006251.0E-7159179IPR001623DnaJ domain
PROSITE patternPS006360164183IPR018253DnaJ domain, conserved site
PROSITE profilePS512935.732472527IPR017884SANT domain
SMARTSM007177.3E-4473525IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-4476515IPR009057Homeodomain-like
SuperFamilySSF466895.55E-7476523IPR009057Homeodomain-like
CDDcd001670.00126477517No hitNo description
PROSITE profilePS512939.074577632IPR017884SANT domain
SMARTSM007174.4E-8578630IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-9579627IPR009057Homeodomain-like
CDDcd001671.04E-6581628No hitNo description
PfamPF002491.4E-8581627IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-6581629IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MMLLLEYSVE SVPAGGSEVY SHTCTLLKSY RKEAAGHIFH YKALLQLGLV SDGAKDDENG  60
KCESEGGDGL TETSRAASSV DFSSIQGGDE ADPRPARHGK KKKQKKSKKA DLYALLGLQH  120
ERWMATESQI RSAYRKAALE HHPDKKRAKS AGDLKALQEN EENFKAIQDA YETLSDPAKR  180
REFDSLDPFD DSLPNESQAV DPDDFFKHFG AAFKRNSKWS VKKPVPDLGD METKDADVDV  240
FYSFWFSFKS WREFPHPDEE DVEAAECREE RRWIERHNAK LREKGRKDEI RRINEFVDLA  300
NRVDPRLVRR RQEERLEKER QKAEKEAARQ RRIEEEIAAK ELEEKIRLEE EAAKQEAKKQ  360
RQIEKKALQK ERSKLRKLTG IQSSDDMSPC VKYPVDDVEL ICSQMDLMSL QRLNADLVSE  420
SSEEEKLQVL KTVFEEALSL EQSDKKAKET AAKSAVLAAK KEEKEALEKR LANLDQWTAE  480
EIRLLNKALD KFPPGTSRRW ETIQGYLRTR TTEEIIDMVK YGLKSGKYTA PSAELVINEK  540
KKAKSQTQTS ATLRQESFTD VSVKQSAPAK DVDSNDSSPY KWSKEEEMKL VKALKEFPKT  600
LEDRWDRVAA AVGSKTKVAC AIRFKELKKS VKAKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A9e-1520430720123Zuotin
5dje_B9e-1520430720123Zuotin
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319331RQKAEKEAARQRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP118489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.14e-56DnaJ domain ;Myb-like DNA-binding domain