PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

model.Picochlorum_contig_280.g962.t1

Organism

Picochlorum sp. SENEW3

Taxonomic ID

1470871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum

Family

HB-other

Protein Properties

Length: 466aa MW: 52750.4 Da PI: 5.7066

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
model.Picochlorum_contig_280.g962.t1	genome	Rutgers	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.7	1.5e-11	134	187	1	54
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 +rkR t+ + l Lee+F+ ++ ps++ ++ LA+k +L+ ++V++WF rR model.Picochlorum_contig_280.g962.t1 134 KRKRSTLPDAALSDLEEAFKTDPFPSQHVKTTLAEKHNLEFKRVSNWFDRRRKT 187 79************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.4E-12	128	185	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-12	130	189	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.641	131	191	IPR001356	Homeobox domain
SMART	SM00389	2.0E-9	133	195	IPR001356	Homeobox domain
CDD	cd00086	1.75E-9	134	189	No hit	No description
Pfam	PF00046	4.7E-9	134	187	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MSHVDENAAD AVAEKVSLPE KEKGTKGEPS PKTLQKDGEK KGTLSALWSK NKKKKSMVVI 60 DMTMDDGEVA EEKKDDGDTA EEKKDGGEDF TIQKCHEFDL IRPKDSPMEE KKNDSQVVAD 120 EMGKDEAVHS DSKKRKRSTL PDAALSDLEE AFKTDPFPSQ HVKTTLAEKH NLEFKRVSNW 180 FDRRRKTARL AGDLPEQKSC SAKGTTTCEA PASEENKGND SVEKGQEKTQ SCVSDAWLME 240 RIGVTRGDLE AEAKQLRERG LLDPLVDINT VKDEMEYSES SLCKLVVGQR CTLSELVSML 300 HPVFTLNQPQ EDALRCSIVD LMVRKTYDPV NKSLEKLQWL EWKNEDSVGN GLWQWEARER 360 DTIPRSSRTH AGALKRRASK VLDRLKCIEN VLNSDESKMG KAEKAIESFK KTSSLKQMEE 420 EFEAQKAAEA SKEAKERLKE MKDLEKAKTV QQKEEERRVA KEVKER

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MSHVDENAAD AVAEKVSLPE KEKGTKGEPS PKTLQKDGEK KGTLSALWSK NKKKKSMVVI  60
DMTMDDGEVA EEKKDDGDTA EEKKDGGEDF TIQKCHEFDL IRPKDSPMEE KKNDSQVVAD  120
EMGKDEAVHS DSKKRKRSTL PDAALSDLEE AFKTDPFPSQ HVKTTLAEKH NLEFKRVSNW  180
FDRRRKTARL AGDLPEQKSC SAKGTTTCEA PASEENKGND SVEKGQEKTQ SCVSDAWLME  240
RIGVTRGDLE AEAKQLRERG LLDPLVDINT VKDEMEYSES SLCKLVVGQR CTLSELVSML  300
HPVFTLNQPQ EDALRCSIVD LMVRKTYDPV NKSLEKLQWL EWKNEDSVGN GLWQWEARER  360
DTIPRSSRTH AGALKRRASK VLDRLKCIEN VLNSDESKMG KAEKAIESFK KTSSLKQMEE  420
EFEAQKAAEA SKEAKERLKE MKDLEKAKTV QQKEEERRVA KEVKER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	137	KKRKRS