PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_40.g203.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family C3H
Protein Properties Length: 153aa    MW: 17253.5 Da    PI: 8.0393
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_40.g203.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.92.9e-122447226
                                         -S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                         kt++C++++  G+C++GdrC+FaHg
  model.Picochlorum_contig_40.g203.t1 24 KTKICMRWQN-GECRFGDRCNFAHG 47
                                         89********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-152154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-92253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.6712249IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-82248IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-92447IPR000571Zinc finger, CCCH-type
SuperFamilySSF510452.37E-9113147IPR001202WW domain
PROSITE profilePS5002013.713114147IPR001202WW domain
SMARTSM004569.7E-9115147IPR001202WW domain
CDDcd002014.73E-7117147No hitNo description
PfamPF003977.3E-9117145IPR001202WW domain
Gene3DG3DSA:2.20.70.102.0E-9119146No hitNo description
PROSITE patternPS011590120145IPR001202WW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDHHSGNRDR PQRRGFRGTA ENAKTKICMR WQNGECRFGD RCNFAHGDDE LRQLPPRHDA  60
GPGRGRGRGR YGDYHNSRDD GYGGGRGRGH HHHQGGYREG SAEHQAWVQS GCPVPGPNGW  120
TQYSTPSGEK YYHNSNTDET QWDVPVDWVD PQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001703693.11e-26RNA binding protein
TrEMBLA0A1D2A0526e-37A0A1D2A052_AUXPR; Uncharacterized protein
STRINGEDO963845e-26(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP569077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-10C3H family protein