PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_53.g500.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family AP2
Protein Properties Length: 377aa    MW: 42060.8 Da    PI: 6.7398
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_53.g500.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63e-13166214255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                           y+GV++++ ++rW+A+++       + k+ +lg f + e+Aa+a++ a+++ +g
  model.Picochlorum_contig_53.g500.t1 166 SYRGVSRHRLTQRWEASLWL------KgKQLYLGGFNFQEDAARAYDLAALACKG 214
                                          69****************99......44**********************98765 PP
2AP227.67.3e-09257300149
                                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                                          s+y+GV+   + grW+A+I  ++  g rk++s g f t+eeAa+++++a
  model.Picochlorum_contig_53.g500.t1 257 SKYRGVS--GQVGRWEARIGSFR--G-RKNVSFGVFETEEEAAQQYDRA 300
                                          79****8..447******99973..3.6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.19E-16165224No hitNo description
Gene3DG3DSA:3.30.730.104.5E-16166223IPR001471AP2/ERF domain
SMARTSM003806.1E-20166228IPR001471AP2/ERF domain
PfamPF008474.5E-9166214IPR001471AP2/ERF domain
PROSITE profilePS5103215.87166222IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-15166223IPR016177DNA-binding domain
PROSITE profilePS5103212.615252314IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-11257316IPR016177DNA-binding domain
CDDcd000187.49E-14257314No hitNo description
PfamPF008472.8E-4257300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-12258314IPR001471AP2/ERF domain
SMARTSM003802.7E-13258320IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDSSREGFAS NKDGITLSVS PSVDPNLVVG PQTGDDGGLF DSDPLAGLDI PLLRDLPTEE  60
ELLSCLGEVG MLPDSCGGSS PLMPSFTHQH DGPPFLEIST ELNGSHVTHQ RQHLAIPCES  120
NGTRRHADTQ SSLVPIAASE HRWNRHEDAP LFSHKLKANS NSMKKSYRGV SRHRLTQRWE  180
ASLWLKGKQL YLGGFNFQED AARAYDLAAL ACKGSKACTN FHASEYTSQL EEIQSFSEEE  240
VVAYIRRRST AFSRGRSKYR GVSGQVGRWE ARIGSFRGRK NVSFGVFETE EEAAQQYDRA  300
LVIEKGRSAK TNFPLQFYES EAFQYDQSQS LCRTEEEKER MKESYTLPVG RTVTLEEKRR  360
GIVITGEALK NNLFRN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005851105.12e-74hypothetical protein CHLNCDRAFT_137655
TrEMBLA0A2P6VPH92e-82A0A2P6VPH9_9CHLO; Floral homeotic APETALA 2-like isoform X1
STRINGXP_005851105.17e-74(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-38related to AP2.7